scil-documentation

Arriving in the lab

  • Onboarding new students
  • Setting up your computer
  • Setting up your personal computer
  • What’s next

Tools

  • Scilpy
  • Dipy
  • Flows
  • Tractoflow
  • RecobundlesX
  • Checks and stats
  • Machine Learning
  • Other tools

Guides

  • Linux
  • Python
  • Git
  • Virtual Machines
  • Nextflow: users
  • Nextflow: coding your own flow
  • Brain anatomy
  • Making a glass brain

Coding standards in the lab

  • General python coding tricks
  • Scilpy coding standards
  • Git good practice

Dealing with heavy data

  • Dealing with heavy data storage
  • Dealing with heavy computing

Other

  • Interesting conferences
  • Interesting scholarships
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