DIPY

Dipy is a diffusion MRI data analysis. It is similar to MRtrix (see the “Other tools” section). One of Dipy’s main authors and contributors, Eleftherios Garyfallidis, was a post-doc in our lab in 2014-2015. It offers many functions coded in python/cython that you can import as a library when analysing your data. It doesn’t offer complete end-to-end scripts, but you can check their official website’s tutorials for scripts examples. You can also check our videos tab in the Teams’ General channel for a tutorial.

Installing Dipy

You can find instructions on their github page. But note that if you install Scilpy, it will install Dipy at the same time.

Warning

Before installing anything, please read the Virtual Environment page!